Entry created on 1 July 2019 (Revision 1.0) Annotator: Rita Pancsa; Orsolya Kovács
Basic protein information
Accession Q22053
Common name Fibrillarin, fib-1
Gene FIB-1
Organism Caenorhabditis elegans
Uniprot name rRNA 2-O-methyltransferase fibrillarin
Basic LLPS information
Organelle nucleolus; dense fibrillar component; nuclear body
Type of experimental evidence
Protein region(s) mediating LLPS
1
-
352
RGG-rich region, methyltransferase domain
Based on the experimental results of the following publication: 27212236
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
Nuclear bodies are RNA and protein-rich, membraneless organelles that play important roles in gene regulation. They condense from the nucleoplasm by concentration-dependent phase separation. FIB1 and NPM1 form immiscible droplets in vitro and in vivo. FIB1 can phase separate in vitro under near physiological protein and salt concentrations, giving rise to condensed liquid-phase droplets that are ∼50-fold more concentrated with protein than the surrounding dilute phase (PMID:26351690, PMID:27212236). The N-terminal R/G domain of FIB1 is sufficient for droplet formation, but does not encode for a separate liquid-like DFC subcompartment; instead, the C-terminal MD of FIB1, which alone is not sufficient for droplet formation, confers immiscibility with proteins in the GC (PMID:27212236).
Literature supporting the LLPS: 26351690, 27212236
Functional class of membraneless organelle: activation/nucleation/signal amplification/bioreactor
Binding partners (at biological protein concentrations)
1) RNA (strictly required for LLPS)
Type of RNA(s) required/used for the LLPS at biological protein concentrations
total RNA as well as specific RNA partner
Molecular interaction types contributing to LLPS
protein-RNA interaction (PMID:27212236) electrostatic (cation-anion) interaction (PMID:27212236)
Determinants of phase separation and droplet properties
1) protein concentration 2) salt concentration
Membrane cluster No
Partner-dependent Yes
RNA-dependent Yes
PTM required No
Domain-motif interactions No
Discrete oligomerization No
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
In vivo, in C. elegans embryo cells FIB1::GFP forms large puncta that co-localize with rRNA (PMID:26351690). In vitro, in the presence of 5 μg/ml rRNA and 150 mM NaCl, FIB1 condenses into droplets at a protein concentration of ∼600 nM. FIB1 droplet microrheology reveals that they are not simple viscous liquid droplets, but are instead viscoelastic. The C-terminal methyltransferase domain (MD) of FIB1 plays a key role in promoting viscoelastic maturation of FIB1 droplets in vitro. The R/G domain (FIB1ΔC) is sufficient to form liquid-like droplets in vitro, while the MD alone (FIB1ΔN) is unable to form droplets in vitro (mutations, particle size and count by microscopy). FIB1ΔC can phase separate into liquid-like droplets in vitro, even in the absence of RNA. By contrast, full-length FIB1 requires rRNA; however, this may be a non-specific consequence of the polyanionic nature of rRNA since heparin can also drive phase separation of full-length FIB1. In vitro FIB1 and NPM1 coexist as multiphase droplets, with the NPM1 rich phase tending to partially envelope the FIB1 rich phase (PMID:27212236). The N-terminal R/G domain of FIB1 is sufficient for droplet formation, but does not encode for a separate liquid-like DFC subcompartment; instead, the C-terminal MD of FIB1, which alone is not sufficient for droplet formation, confers immiscibility with proteins in the GC (PMID:27212236).
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:27212236) rheological traits (PMID:27212236) morphological traits (PMID:27212236)