Entry created on 1 July 2019 (Revision 1.0) Annotator: Rawan Abukhairan
Basic protein information
Accession Q07352
Common name TIS11B
Gene ZFP36L1
Organism Homo sapiens
Uniprot name mRNA decay activator protein ZFP36L1
Basic LLPS information
Organelle cytoplasmic ribonucleoprotein granule; TIS granule
Type of experimental evidence
Protein region(s) mediating LLPS
1
-
338
Full protein sequence contributes to LLPS (charge pattern required)
Based on the experimental results of the following publication: 30449617
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
TIS11B is an RNA-binding protein encoded by the ZFP36L1 gene, which is widely expressed across human tissues and cell types. TIS11B was found to form TIS granules through physiological assembly. TIS11B generates reticular assemblies that are intertwined with the peri-nuclear ER and that enrichs specific mRNAs and proteins. The association between TIS granules and the ER creates a subcellular compartment—the TIGER domain (TIS granule-ER)—with a biophysically and biochemically distinct environment from the cytoplasm. TIS granules enable translation of mRNAs with AU-rich elements at an ER subdomain. Specific protein-protein interactions can only be formed in the TIS granule region. mRNAs that combine the presence of multiple AREs in their 3'UTRs and the presence of at least one region that encodes a transmembrane domain, are enriched in TIS granules, whereas in the absence of both features mRNAs are excluded from TIS granules. TIS11B assemblies are called TIS granules as they enrich LU mRNA, because they have the characteristics of RNA granules. TIGER compartment promotes 3'UTR-mediated interaction of SET with membrane proteins, thus allowing increased surface expression and functional diversity of proteins, including CD47 and PD-L1. It has been shown that TIS11B assembly is not caused by the presence of the IDR, but instead is charge pattern driven. Importantly, regulation of mRNA stability can be accomplished by soluble TIS11B, but TIS11B assembly is required for the collective properties of the protein that endow it with the ability to regulate protein functions through mediating 3'UTR-dependent protein-protein interactions. TIS11B assembly is conserved among vertebrate species. However, no in vitro investigation of the protein were performed. As a conclusion, the association of TIS granules with the ER creates a subcellular compartment with special properties that is necessary and sufficient for SET transfer from mRNAs to proteins, and thus, for the 3'UTR-dependent interaction of SET, and likely other proteins, with membrane proteins (PMID:30449617)
Literature supporting the LLPS: 30449617
Functional class of membraneless organelle: activation/nucleation/signal amplification/bioreactor; biomolecular filter/selectivity barrier
Binding partners (at biological protein concentrations)
1) ER membrane (TIS granules intertwined with it) 2) mRNA 3) membrane proteins
Type of RNA(s) required/used for the LLPS at biological protein concentrations
mRNAs of membrane proteins with multiple AREs in their 3'UTRs
Molecular interaction types contributing to LLPS
linear oligomerization/self-association (PMID:30449617) electrostatic (cation-anion) interaction (PMID:30449617)
Determinants of phase separation and droplet properties
N/A
Membrane cluster No
Partner-dependent No
RNA-dependent No
PTM required No
Domain-motif interactions No
Discrete oligomerization No
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
In vivo fluorescent confocal microscopy of endogenous TIS11B protein in HeLa cells showed that the protein forms peri-nuclear assemblies that cover a substantial portion of the ER (protein localization). Live cell imaging using confocal microscopy and time lapse microscopy showed, in addition to soluble TIS11B in the cytoplasm, that TIS11B assemblies form a meshwork that is intertwined with the ER (morphology). 3D-reconstruction of confocal images showed that TIS11B assemblies have tubule-like structures that look similar to the ER, but are more bulky (morphology). FRAP assay suggested a gel-like state of the TIS11B assemblies (morphology). Using fluorescently tagged different costructs, RNA-fluorescence in situ hybridization (FISH) showed that membrane protein-encoding mRNAs that contain multiple AU-rich elements (AREs) in their 3'UTRs co-localize with and are enriched in TIS granules. Confocal live cell imaging confirmed that TIS granules enrich specific proteins (protein localization). In vivo small hairpin RNA (shRNA)-mediated depletion of TIS11B (RNAi) and co-immunoprecipitation (coIP) showed that TIS11B is required for the 3'UTR-mediated binding of SET to the membrane protein CD47. By introducing point and deletion mutations in TIS11B, as well as knockout of endogenous TIS11B it was shown by confocal live cell imaging microscopy and FACS analysis that TIS11B is the scaffold of TIS granules and its assembly is charge pattern-driven. Confocal live cell image microscopy showed that TIS11B is widely expressed and TIS granule formation is conserved among vertebrates. FRAP and retention assays showed that the biophysical and biochemical properties of the interior of TIS granules (morphology) are different from those of the cytoplasm. (PMID:30449617)
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:30449617) morphological traits (PMID:30449617)