Entry created on 1 July 2019 (Revision 1.0) Annotator: Rita Pancsa
Basic protein information
Accession Q06787
Common name FMRP
Gene FMR1
Organism Homo sapiens
Uniprot name Synaptic functional regulator FMR1
Basic LLPS information
Organelle cytoplasmic stress granule; cytoplasmic ribonucleoprotein granule; synaptosome, neuron projection; neuronal ribonucleoprotein granule
Type of experimental evidence
Protein region(s) mediating LLPS
445
-
632
C-terminal R/G-rich RGG motif-containing LC region
Based on the experimental results of the following publication: 30765518
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
Local translation at the synaptic region of neurons occurs in response to neuronal activity and is referred to as activity-dependent translation. This process regulates synaptic strength and facilitates synaptic plasticity and long-term memory formation. Neurons control activity-dependent translation by sorting and packaging mRNAs into non-membrane-bound protein assemblies known as neuronal granules. These granules transport mRNAs from the neuronal cell body toward the synaptic terminals; mRNA translation is inhibited during transport and then activated in response to stimuli at the synapse. FMRP is a primary component of neuronal granules. It has a low complexity region (LCR), and the FMRP-LCR-RNA droplets are dynamic and liquid-like. Translational repressors and miRNAs partition into, and concentrate within these FMRP-LCR-RNA droplets. FMRP-LCR phosphorylation by its in vivo kinase partner increases its phase-separation propensity possibly through increasing negative charge densities of glutamic/aspartic acid-rich clusters (PMID:30765518). Arginine perturbations, either by methylation or reduction in pi character by substitution of arginine for lysine residues, perturb important interactions that facilitate the general phase-separation behavior of FMRP-LCR, as previously found for Ddx4. Thus, methylation represents a posttranslational modification that decreases FMRP phase-separation propensity and thus may be important for facilitating neuronal granule disassembly in cells. FMRP-LCR phase separation in vitro, with posttranslational modifications potentially acting as a switch at near physiological concentrations, represents a distinct mechanism for translation inhibition (PMID:30765518).
Literature supporting the LLPS: 22579281, 28377034, 30765518
Functional class of membraneless organelle: activation/nucleation/signal amplification/bioreactor; protective storage/reservoir
Binding partners (at biological protein concentrations)
1) RNA (strictly required)
Type of RNA(s) required/used for the LLPS at biological protein concentrations
different RNA sequences, including sc1 RNA
Molecular interaction types contributing to LLPS
protein-RNA interaction (PMID:30765518) electrostatic (cation-anion) interaction (PMID:30765518) π-π (pi-pi) interactions (PMID:30765518)
Determinants of phase separation and droplet properties
1) protein concentration of FMRP 2) RNA concentration 3) ionic strength 4) modification state
Membrane cluster No
Partner-dependent Yes
RNA-dependent Yes
PTM required No
Domain-motif interactions No
Discrete oligomerization No
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
When transfecting CHO cells with a CFP fused to FMRP (FMRP-CFP) or CFP alone, overexpressed FMRP-CFP induces the formation of distinct micrometer-sized foci in the cytoplasm in vivo (protein localization, particle size and count by microscopy), whereas transfection of CFP alone results in diffuse fluorescence. Three different constructs have been used for in vitro studies: full-length FMRP, truncated FMRP lacking the low-complexity region (FMRPΔLCR), and the 188-residue C-terminal low-complexity region of FMRP containing the RGG motifs. At low in vitro protein concentrations (50μM), droplet formation was not observed for any construct (particle size and count by microscopy). Upon addition of Cy3-labeled sc1 RNA, droplets were formed with FMRP and FMRP-LCR, but not with FMRPΔLCR. FMRP-LCR alone is necessary and sufficient to drive phase separation with sc1 RNA in vitro, however, FMRP-LCR-RNA phase separation is not sequence-specific and does not require sequences capable of G-quadruplex formation. FMRP-LCR-RNA droplets are dynamic and liquid-like (FRAP, morphology). Translational repressors and miRNAs partition into, and concentrate within, FMRP-LCR-RNA droplets (co-localization). Increasing salt concentrations disfavored FMRP-LCR droplet formation in the presence of sc1 RNA. FMRP-LCR phosphorylation by its in vivo kinase partner CKII increases its phase-separation propensity (particle size and count by microscopy) possibly through increasing negative charge densities of glutamic/aspartic acid-rich clusters. FMRP-LCR methylation by PRMT1 decreases phase-separation propensity without notably altering sc1 RNA-binding affinity. Arginine perturbations, either by methylation or reduction in pi character by substitution of arginine for lysine residues, perturb important interactions that facilitate the general phase-separation behavior of FMRP-LCR, as previously found for Ddx4 (PMID:30765518).
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:30765518) morphological traits (PMID:30765518) other: NMR (PMID:30765518)