Entry created on 1 July 2019 (Revision 1.0) Annotator: Beáta Szabó; Rita Pancsa
Basic protein information
Accession P31483
Common name TIA1
Gene TIA1
Organism Homo sapiens
Uniprot name Nucleolysin TIA-1 isoform p40
Basic LLPS information
Organelle cytoplasmic stress granule
Type of experimental evidence
Protein region(s) mediating LLPS
1
-
386
Full protein sequence contributes to LLPS: 3 RRM domains and IDR
Based on the experimental results of the following publication: 29298433
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
Tia1 is a well-known stress granule protein. The IDR of Tia1 alone (without RNA binding regions) was not able to phase separate in vitro even in the presence of RNA (tested at low and phisiological salt concentration) (PMID:26412307). Zn²⁺ is rapidly released during arsenite treatment and is necessary for efficient recruitmentof TIA-1 into stress granules, as well as retention. Both in vitro data and cell culture studies are consistent with the idea that Zn²⁺ promotes homomeric multimerization and phase separation of TIA-1, which in turn drives the assembly of TIA-1-positive stress granules (PMID:29298433).
Literature supporting the LLPS: 15371533, 22579281, 26412307, 27768896, 28817800, 29298433, 29457785
Functional class of membraneless organelle: protective storage/reservoir
Binding partners (at biological protein concentrations)
1) RNA
Type of RNA(s) required/used for the LLPS at biological protein concentrations
RNA not required.
Molecular interaction types contributing to LLPS
linear oligomerization/self-association (PMID:29298433) prion-like aggregation (PMID:29961577) cation-π (cation-pi) interactions (PMID:29961577) π-π (pi-pi) interactions (PMID:29961577)
Determinants of phase separation and droplet properties
1) presence of Zn²⁺ (upregulator of TIA-1 multimerization) 2) salt concentration
Membrane cluster No
Partner-dependent No
RNA-dependent No
PTM required No
Domain-motif interactions No
Discrete oligomerization Yes
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
SG dynamics were monitored in HeLa in vivo cells expressing N-terminal GFP-tagged TIA1 wild-type, P362L, A381T, or E384K mutants. GFP-tagged TIA1 showed the identical punctate subcellular distribution as endogenous or untagged TIA1 proteins (protein localization), and the frequency and size of SGs containing these proteins were not altered by introduction of exogenous TIA1 at this modest expression level. We observed no significant impact of the P362L, A381T, or E384K TIA1 mutations on the rates of SG assembly. By contrast, each of these disease-associated mutations resulted in significantly protracted SG disassembly, as assessed by both blinded manual counting and automated image analysis (particle size and count) (PMID:28817800). Fluorescently tagged, recombinant TIA1-EYFP was shown to self-multimerize in the presence of ZnCl₂ detected by a FRET-based assay in vitro. Using Confocal and Differential interference contrast (DIC) microscopy the droplet formation of the same fluorescently labeled protein was observed in a Zn²⁺ concentration dependent manner at physiological salt concentration. Both low and high salt (50 and 500 mM NaCl, respectively) caused a reduction in droplet size, droplet number, and rate of droplet formation emphasizing the importance of optimal electrostatic interactions to drive the formation of higher-order TIA-1 condensates. The solutions of TIA-1-EYFP developed visible turbidity that varied positively with protein concentration, zinc addition, and molecular crowding by poly-ethylene glycol (PEG) addition. Addition of DTT to simulate the reducing environment of the cell prevented the formation of TIA-1 droplets normaly induced by ZnCl₂ and eliminated the zinc dose response in the FRET assay, consistent with the idea that TIA-1 multimerization is responsive to both zinc and reduction-oxidation (redox) environment (PMID:29298433). In vitro full-length TIA1 spontaneously phase separated in the absence of any cosolute, at physiological ionic strength of 150 mM, and pH 7.5 on a temperature-sensitive way observed by DIC microscopy. The three disease related mutant of Tia1 (P362L, A381T, E384K) underwent spontaneous temperature- and concentration-dependent LLPS to create liquid droplets that at early time points were morphologically indistinguishable from liquid droplets formed by wild-type protein. In all cases a significant leftward shift in the co-existence line to a lower protein concentration was observed, indicating an increased propensity of mutant TIA1 to phase separate, due to stronger intermolecular protein-protein interactions. Using a quantitative ThT fluorescence assay it has been confirmed that disease-associated mutations in TIA1 significantly accelerated fibrillization. Fluorescence recovery after photobleaching (FRAP) measurements showed that disease-associated mutations significantly altered the dynamic exchange of TIA1 between the dense droplet phase and the light mono-disperse phase, with increased half-recovery times and a smaller overall mobile fraction. These results suggest that the mutations changed the material properties of mutant TIA1 droplets by enhancing transient, nonspecific intermolecular interactions that reduce protein mobility. This observation raises the possibility that material properties of membrane-less organelles composed of TIA1 protein in live cells, such as SGs, could be adversely affected by the disease-associated mutations (PMID:28817800). The same results were obtained in the case of the N357S mutant (PMID:29457785). The intact protein and the IDR alone precipitates by the b-isox chemical treatment. (PMID:22579281)
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:29298433) dynamic exchange of molecules with surrounding solvent (PMID:29298433)