Entry created on 1 July 2019 (Revision 1.0) Annotator: Beáta Szabó
Basic protein information
Accession P22626-2
Common name HNRNPA2B1, HNRPA2B1
Gene HNRNPA2B1
Organism Homo sapiens
Uniprot name Isoform A2 of Heterogeneous nuclear ribonucleoproteins A2/B1
Basic LLPS information
Organelle cytoplasmic stress granule; cytoplasmic ribonucleoprotein granule
Type of experimental evidence
Protein region(s) mediating LLPS
1
-
341
Full protein sequence contributes to LLPS: N-terminal RRMs, C-terminal prion-like LCD
Based on the experimental results of the following publication: 26544936
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
The low complexity (LC) region of hnRNPAB2 is intrinsically disordered. When incubated at high concentration, it is able to polymerize into labile, amyloid-like fibers and form cross-beta polymerization structures, probably driving the formation of hydrogels. In contrast to irreversible, pathogenic amyloids, the fibers polymerized from LC regions disassemble upon dilution. A number of evidence suggest that formation of cross-beta structures by LC regions mediate the formation of RNA granules, liquid-like droplets, and hydrogels. LC domain is collapsed and undergoes LLPS, which readily converts to aggregates for disease mutations. The LC of hnRNPA2 is necessary and sufficient for LLPS and aggregation. The LC domain and the C-terminal domain of TDP-43 interact and co-phase-separate via transient interactions, while hnRNPA2 LC domain methylation by PRMT1 reduces phase separation (PMID:26544936, PMID:29358076). Tyrosine protein kinase Fyn is not strictly required for LLPS, but promotes it and delays aggregation of the P298L mutant (PMID:30397184, PMID:18490510).
Literature supporting the LLPS: 26544936, 22579281, 29358076, 30397184, 26412307
Functional class of membraneless organelle: protective storage/reservoir
Binding partners (at biological protein concentrations)
1) mRNA 2) TDP-43 3) tyrosine protein kinase Fyn (not strictly requiered, but induces LLPS)
Type of RNA(s) required/used for the LLPS at biological protein concentrations
RNA not required.
Molecular interaction types contributing to LLPS
prion-like aggregation (PMID:29961577) cation-π (cation-pi) interactions (PMID:29961577) π-π (pi-pi) interactions (PMID:29961577)
Determinants of phase separation and droplet properties
1) salt concentration 2) temperature
Membrane cluster No
Partner-dependent No
RNA-dependent No
PTM required No
Domain-motif interactions Yes
Discrete oligomerization No
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
U2OS cells were grown on coverslips, heat shocked at 44°C for 45 min, fixed and co-stained with DAPI (blue color), and antibodies to TIA1 (red color) and PPIA (green color). In vivo, TIA1 showed a punctate localization to stress granules and co-localization with the PPIA enzyme (PMID:26544936). In vitro differential interference contrast (DIC) microscopy experiments: Full-length WT hnRNPA2 undergoes LLPS after cleavage of a solubility tag (N-terminal maltose-binding protein). At the same conditions, D290V mutant quickly forms aggregates (morphology). Over time, WT droplets fuse and grow (morphology, particle size and count) while D290V aggregates grow larger. P298L forms droplets initially but aggregates over time. Truncation of LC domain (residues 1–189, DLC) prevents both LLPS and aggregation, suggesting that the LC domain is necessary for both phase separation and aggregation. In vitro NMR experiments: NMR spectrum of phase-separated (apparent concentration 30 mM) hnRNPA2 LC domain (181-341) is highly similar to the spectrum of the monomeric peptide in dispersed phase (65 μM), indicating that the conformations that give rise to the observed LLPS resonances remain disordered. Overlay of 15N-edited one-dimensional spectra of 65 μM monomer and phase-separated state: The monomeric signals are so weak compared to the phase-separated state, they appear as a straight line. The monomeric spectrum is visible at much lower intensity than the phase-separated state, about 470 times less intense than the condensed phase signals, providing an estimated concentration in the condensed phase. NMR spin relaxation parameters R2, R1, and NOE sensitive to local motions at observable resonances of phase-separated and monomer hnRNPA2 LC domains are consistent with structural disorder but slowed motions after LLPS. Slightly lower values of R2 for dispersed-phase reference sample at lower pH suggest some contribution from water exchange to measured R2. (PMID:26544936, PMID:29358076)
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:26544936) reversibility of formation and dissolution (PMID:26544936)