Entry created on 1 July 2019 (Revision 1.0) Annotator: Rita Pancsa; Orsolya Kovács
Basic protein information
Accession P17600
Common name SYN1
Gene SYN1
Organism Homo sapiens
Uniprot name Synapsin-1
Basic LLPS information
Organelle presynaptic cytosol; a matrix holding together clusters of synaptic vesicles (SVs)
Type of experimental evidence
Protein region(s) mediating LLPS
421
-
705
P/Q-rich C-terminal IDR with P-rich motifs
Based on the experimental results of the following publication: 29976799
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
Neurotransmitter-containing synaptic vesicles (SVs) form tight clusters at synapses. These clusters act as a reservoir from which SVs are drawn for exocytosis during sustained activity. Several components associated with SVs that are likely to help form such clusters have been reported, including synapsin. Synapsin can form a distinct liquid phase in an aqueous environment. Other scaffolding proteins, for example SH3 domain-containing proteins, could coassemble into this condensate but were not necessary for its formation. Importantly, the synapsin phase could capture small lipid vesicles in vitro. The synapsin phase rapidly disassembled upon phosphorylation by calcium/calmodulin-dependent protein kinase II (CaMKII), this calcium-dependent phosphorylation probably serves the release of vesicles from clusters during sustained activity of the nerve terminal. In synapsin KO mice the number and packing of SVs were significantly lower and this decrease is selective for SVs away from active zones. Thus synapsin can form a separate liquid biomolecular condensate either alone or together with binding partners for its IDR, with lipid vesicles, or with both (PMID:29976799).
Literature supporting the LLPS: 29976799, 28279363, 30093586
Functional class of membraneless organelle: protective storage/reservoir
Binding partners (at biological protein concentrations)
1) intersectin (not required, but promotes LLPS) 2) GRB2 (not required, but promotes LLPS)
Type of RNA(s) required/used for the LLPS at biological protein concentrations
RNA not required.
Molecular interaction types contributing to LLPS
electrostatic (cation-anion) interaction (PMID:29976799) discrete oligomerization (PMID:29976799)
Determinants of phase separation and droplet properties
1) protein concentration of SYN1 2) salt concentration 3) crowding agent concentration
Membrane cluster No
Partner-dependent No
RNA-dependent No
PTM required No
Domain-motif interactions No
Discrete oligomerization Yes
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
The enhanced green fluorescent protein, eGFP-fused synapsin 1 IDR formed micrometer-sized droplets (particle size and count) when incubated in a physiological buffer in vitro as assessed by microscopy. The amount and size of droplets correlated with protein concentraion and salt concentration in vitro, while addition of a crowding agent resulted in instant droplet formation. Turbidity (change in optical properties) of the samples was also observed. Synapsin 1 co-localized with SH3 domain-containing partners GRB2 and intersectin within the droplets. Also, synapsin 1 condensates sequenstered lipid vesicles (liposomes) in vitro by electron microscopy. Phosphorylation of SYN1 by CaMKII (but not by PKC) dispersed the droplets of either SYN1 alone or SYN1 and liposomes. In vivo, knock-out mice wherein all three synapsin genes were knocked out showed a decrease in the number and packing of synaptic vesicles away from active zones (morphology) by electron microscopy. PMID:29976799.
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:29976799) morphological traits (PMID:29976799)