Entry created on 1 July 2019 (Revision 1.0) Annotator: Rita Pancsa
Basic protein information
Accession P09651
Common name HNRNPA1, HNRPA1
Gene HNRNPA1
Organism Homo sapiens
Uniprot name Heterogeneous nuclear ribonucleoprotein A1
Basic LLPS information
Organelle cytoplasmic stress granule
Type of experimental evidence
Protein region(s) mediating LLPS
186
-
372
C-terminal G-rich prion-like LC region
Based on the experimental results of the following publication: 26406374
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
hnRNPA1 in stress granules is in dynamic equilibrium with the surrounding cytosol. LLPS by hnRNPA1 occurs spontaneously in a temperature- and protein-concentration-dependent manner in the absence of a crowding agent. Liquid-liquid phase separation by hnRNPA1 is mediated by the C-terminal low complexity domain (LCD) and is distinct from fibrillization. Its LLPS is enthalpy driven and aromatic and electrostatic interactions are its major driving forces. hnRNPA1 amino acid residues 259–264 correspond to a steric zipper motif centered in the LCD and are essential to hnRNPA1’s intrinsic tendency to fibrillize (PMID:23455423). Importantly, the corresponding deletion mutant (A1-Dhexa), which does not fibrillize, readily underwent LLPS, demonstrating that LLPS and fibrillization are two mechanistically distinct processes (PMID:23455423). Molecular crowding, electrostatic and hydrophobic interactions, and increased cytoplasmic concentration of hnRNPs contribute to liquid-liquid phase separation of hnRNPA1. RNA facilitates liquid-liquid phase separation of hnRNPA1 by binding to RRMs and LCD. hnRNPA1 is also able to assemble into hydrogels composed of uniformly polymerized amyloid-like fibers (PMID:22579281), however, hnRNPA1 is more rigidly incorporated into hydrogels than into liquid droplets. Missense mutations in the LCD of hnRNPA1 cause ALS and multisystem proteinopathy (MSP), a pleiotropic degenerative disorder affecting muscle and brain (PMID:26406374, PMID:26412307, PMID:23455423).
Literature supporting the LLPS: 26406374, 22579281, 23455423, 26412307, 28041848, 27768896, 29425497, 30728452, 31043593
Functional class of membraneless organelle: protective storage/reservoir
Binding partners (at biological protein concentrations)
1) RNA (not strictly required, but reduces critical hnRNPA1 concentration)
Type of RNA(s) required/used for the LLPS at biological protein concentrations
N-terminally fluorescently labeled RNA fl-RNA44
Molecular interaction types contributing to LLPS
electrostatic (cation-anion) interaction (PMID:23455423) cation-π (cation-pi) interactions (PMID:23455423) π-π (pi-pi) interactions (PMID:23455423) formation of amyloid-like/cross-beta/kinked/stacked beta-sheet structures (PMID:31043593)
Determinants of phase separation and droplet properties
1) crowding agent concentration 2) salt concantration 3) temperature 4) protein concentration of hnRNPA1
Membrane cluster No
Partner-dependent No
RNA-dependent No
PTM required No
Domain-motif interactions No
Discrete oligomerization No
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
The His-SUMO-hnRNPA1 solution exhibited spontaneous temperature-dependent reversible turbidity in the absence of a crowding agent in vitro, which was revealed by differential interference contrast microscopy to reflect the presence of numerous droplets (protein localization, particle size and count). Deletion studies indicate that liquid-liquid phase separation by hnRNPA1 is mediated by the C-terminal low complexity domain (LCD). Using His-SUMO fusion constructs of truncated hnRNPA1 containing either the folded N-terminal RNA recognition motifs (A1-RRM) or the C-terminal disordered LCD (A1-LCD), the A1-LCD alone had the ability to form liquid droplets, whereas A1-RRM failed to undergo LLPS under comparable conditions to full-length hnRNPA1 (A1-FL) and all other conditions tested. Both GFP-tagged A1-LCD and a version with deletion of aa259–264 constituting the steric zipper (GFP-LCD Δhexa) efficiently incorporated into stress granules in HeLa cells in vivo. Ficoll and polyethylene glycol (PEG) were both able to promote hnRNPA1 LLPS. Lowering the NaCl concentration led to LLPS at lower A1-FL concentrations, suggesting that electrostatic interactions contributed to LLPS (PMID:26406374). After cooling down the hnRNPA1 solution from 25 °C to 4 °C negative-staining TEM showed bunches of amyloid fibrils within hnRNPA1 droplets (morphology), which was confirmed by monitoring Thioflavin T (ThT) fluorescence. As temperature was reverted back to 25 °C, the hnRNPA1 solution became clear again, and neither droplets nor amyloid fibrils was observed, indicating that the fibrils are reversible. Based on the ThT intensity, <10% of the total proteins in droplets formed reversible fibrils. However, when keeping the cloudy hnRNPA1 solution at 4 °C for several hours, the solution spontaneously became clear and the amount of reversible fibrils decreased, while a significant amount of irreversible amyloid fibrils emerged which are stable as temperature increased to 25 °C for elongated time. Segment 209-GFGGNDNFG-217, called hnRNPA1 reversible amyloid core, hnRAC1, but not the others, formed hydrogel at 4 °C. The hydrogel was composed of amyloid fibrils observed by TEM. As temperature increased to 25 °C, the fibrils disassociated spontaneously, resembling the behavior of full-length hnRNPA1. In addition to hnRAC1, another two candidates, 246-GFGNDGSNF-254 (named hnRAC2) and 260-YNDFGNY-266 (named hnRAC3) have also been identified. X-ray fibril diffraction showed that reversible hnRAC1, hnRAC2 and hnRAC3 fibrils also feature a typical cross-β architecture as seen in irreversible amyloid fibrils (PMID:31043593).
Experimental observations supporting the liquid material state of the condensate
morphological traits (PMID:26406374) dynamic exchange of molecules with surrounding solvent (PMID:26406374) temperature-dependence (PMID:26406374) reversibility of formation and dissolution (PMID:26406374)