Entry created on 1 July 2019 (Revision 1.0) Annotator: Rita Pancsa; Orsolya Kovács
This entry is part of a multi-component system encompassing the following entries: O43561 P62993 Q07889
Basic protein information
Accession O43561
Common name LAT
Gene LAT
Organism Homo sapiens
Uniprot name Linker for activation of T-cells family member 1
Basic LLPS information
Organelle TCR signalosome; LAT signalosome
Type of experimental evidence
Joined entry O43561 P62993 Q07889
Protein region(s) mediating LLPS
28
-
262
Disordered cytoplasmic tail with four (phospho)tyrosine residues
Based on the experimental results of the following publication: 27056844
Molecular features viewer
PDB structures
Extended LLPS information
Functional description
Many cell surface receptors and downstream signaling molecules coalesce into micrometer- or submicrometer-sized clusters upon initiation of signaling. However, the effect of this clustering on signal transduction is poorly understood. T cell receptor (TCR) signaling is a well-studied example of this general phenomenon. In the upstream module, the TCR is phosphorylated by Lck, a membrane-bound protein kinase of the Src family. TCR phosphorylation is opposed by a transmembrane phosphatase, CD45. The phosphorylated cytoplasmic domains of the TCR complex recruit and activate the cytosolic tyrosine kinase ZAP70, which then phosphorylates the transmembrane protein LAT on multiple tyrosine residues. These phosphotyrosines are binding sites for the SH2 domains of adapter protein Grb2 (or Gads), which further interacts with Pro-rich motifs within Sos1 (or SLP-76) through its SH3 domains. LAT and its binding partners coalesce into micrometer- or submicrometer-sized clusters at the plasma membrane upon TCR activation. Dephosphorylation of pLAT by high concentrations of the soluble protein tyrosine phosphatase 1B (PTP1B, 2 µM) caused the clusters to disassemble. Components of the LAT complex activate several downstream modules that mediate calcium mobilization, mitogen-activated protein kinase (MAPK) activation, and actin polymerization. Actin polymerization is initiated from and can reorganize LAT clusters. The experiments suggest that both the phosphorylation state and pY valency of LAT as well as the presence of both SH3 domains in GRB2 are important for cluster formation (PMID:27056844).
Literature supporting the LLPS: 27056844, 30951647
Functional class of membraneless organelle: activation/nucleation/signal amplification/bioreactor; regulator of spatial patterns
Binding partners (at biological protein concentrations)
1) GRB2 (strictly required for LLPS) 2) SOS1 (strictly required for LLPS)
Type of RNA(s) required/used for the LLPS at biological protein concentrations
RNA not required
Molecular interaction types contributing to LLPS
multivalent domain-motif interactions (PMID:27056844) multivalent domain-PTM interactions (PMID:27056844)
Determinants of phase separation and droplet properties
1) protein density in membrane of LAT 2) valency of LAT 3) valency of GRB2
Membrane cluster Yes
Partner-dependent Yes
RNA-dependent No
PTM required Yes
Domain-motif interactions Yes
Discrete oligomerization No
Regulation and disease
Post-translational modifications affecting LLPS
Position Residue PTM Effect Reference Modifying enzyme Notes
Isoforms known to affect LLPS
Isoform Effect Reference
All known isoforms containing sequence changes in the LLPS region(s)
Position type Isoform names from UniProt
Disease mutations affecting LLPS
Mutation dbSNP Disease OMIM Effect Reference Notes
Experimental information
Experimental techniques applied to prove/investigate LLPS
Phosphorylated and fluorescently tagged LAT was shown to form liquid-like clusters interacting with GRB2 and SOS1 using microscopy imaging (TIRF) in vitro; and protein dephosphorylation led to the decrease of the particle size and count, marking the disassembly of the condensate. The liquid-like property was evidenced by FRAP. Induced mutation removing the second SH3 domain of GRB2 led to the disassembly of the condensate, demonstrating the importance of valency of the interacting partners. Similarly, stepwise induced mutations of the phosphorylated tyrosines to phenylalanines of LAT correlated with the degree of disruption of the condensate. Functional readout in in vivo studies showed that the clustering of mCitrine-fused LAT is localized to the plasma membrane, and promotes MAPK(ERK) signaling in T cells, thus the in vitro determined effects are biologically relevant in the cellular context. In vitro LAT clusters co-localized with CD45 (a physiological phosphatase of LAT) in artificial membranes, serving as a dephosphorylation assay. The in vivo morphology of liquid droplets were observed and fusion events were followed using microscopy. In vitro LAT clusters enhanced the polymerization of actin, given that the required components are available. PMID:27056844.
Experimental observations supporting the liquid material state of the condensate
dynamic movement/reorganization of molecules within the droplet (PMID:27056844) morphological traits (PMID:27056844)